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User:Sandbox Mosaic virus Crassvirales Tubulavirales

Work[edit]

Virus
Virus classification
(unranked):	Virus
Unranked
	Yumkaaxvirus pescaderoense ICTV 2022; Yumkaaxvirus afdrgae ICTV 1972;
Synonyms
	Yumkaaxvirus Previous name ICTV 1772; Yumkaaxvirus pescaderoense Yumkaaxvirus previoususe wounœ ICTV 1984; Yumkaaxvirus previoususe tdosæ ICTV 1776; Methanophagales virus PBV300 Virus name; PBV300 Virus name abbr.; OP413840 GenBank accession; HYPOTHACCESS11213 REFSEQ accession;

Will work on on every virus page below the level family based on ICTV reports

Tables: {{div col|colwidth=18em}} {{div col end}}

I will work on

Classification[edit]

Classification tree uses Template:clade

Based on a compilation of the following works.^[1]^[2]^[3]^[4]^[5]

Phylogeny is based on Exact evolution. Taxonomy is based on neat classification. Still, Taxonomy is always be based on Phylogeny if possible.

Biota[edit]

All life, and life-like things.

Binucleic(Cytota) life is true life.
Uninucleic(Acytota) is a grey-area
Proteins are not currently life in any models

Phylogeny: hypothesis[edit]

(Nucleic) Biota

Acytota

	Virusida^[1]^[5]

	Viroida^[1]^[5]

	Satellida (satellite viruses)

	Acytota incertae sedis

Cytota

	Bacteria (Paraphyletic?)

	Archaea (Paraphyletic)

	Eukarya

Acellular life

Cellular life

Taxonomy[edit]

Empire Acytota taxon inquirendum
- Domain Virusida
- Domain Viroida
- Domain Satellida
Empire Cytota
- Domain Bacteria (Paraphyletic?, Bacteria;non-Archaea?)?
- Domain Archaea (Paraphyletic, Archaea;non-Eukarya)
- Domain Eukarya

Acytota[edit]

[Virophage phylogeny diagram]

Phylogeny: Hypothesis[edit]

Acytota

Virus ^[1]

Viroid circssRNA^[2]

	Virusoid circssRNA Satellite(probably viroids that were enveloped)

Satellite unclassified ^[3]

Satellite virus

	Chronic bee-paralysis associated satellite virus ssRNA(+)

	Albetovirus, Aumaivirus, Papanivirus, Virtovirus ssRNA(+)

	Sarthroviridae ssRNA(+)

Dependoparvovirus ssDNA(+)

Virophage/Lavidaviridae dsDNA

Virus‑dependent satellite nucleic acids

ssDNA(+)

	Alphasatellitidae

	Tolecusatellitidae

dsRNA itself

Totiviridae associated virus satellites dsRNAs

Saccharomyces cerevisiae virus satellite M

	Saccharomyces cerevisiae M1 virus satellite

	Saccharomyces cerevisiae M2 virus satellite

	Saccharomyces cerevisiae M28 virus satellite

Ustilago maydis virus H satellite M

	Ustilago maydis M-P1 virus satellite

	Ustilago maydis M-P4 virus satellite

	Ustilago maydis M-P6 virus satellite

Trichomonas vaginalis T1 virus satellite

Partitiviridae associated virus satellites dsRNAs

	dsRNA1

	dsRNA2

Zygosaccharomyces bailii virus satellite M / Zybavirus balii satellite M

ssRNA

	(+large, +linear)

	(-large, +linear)

	Virusoid circssRNA probably viroids that were enveloped

	Ribozyviria

	Polerovirus-associated RNAs

Retrotransposons

Retrozymes circRNA

Group LTR retrotransposons

	ssRNA-RT VIRUS (Belpaoviridae; Metaviridae; Pseudoviridae)

Defective interfering particles

Taxonomy[edit]

Virusida Domain
- Realms...
Viroida Domain
- Realms...
Satellida Domain
- Verusatellida
- Acidsatellida
Acytota incertae sedis
- Retrotransposons
- DIPs

Bacteria[edit]

I am curious if Bacteriobiota are paraphyletic, though I currently dont subscribe to the theory

Phylogeny[edit]

Bacteria Domain

	Chloroflexota Phylum

Dormibacteriota Phylum

Armatimonadota Phylum

Eremiobacteriota Phylum

Bacillia Realm

Bacillota_E Phylum

Bacillota_G Phylum

Halanaerobiota Phylum

	Bacillota_D Phylum

	Bacillota Phylum

Bacillota_A Phylum

	Desulfotomaculota Phylum

	SelenobacteriotaPhylum

	Actinobacteria Realm

Cyanobacteria Realm

Margulisbacterida Kingdom

	Margulisbacteriota Phylum

Cyanobacterida Kingdom

	Cyanobacteriota Phylum

	Melainabacteriota Phylum

Thermotogia Realm

Synergistida Kingdom

	Atribacteriota Phylum

	Synergistota Phylum

Thermotogida Kingdom

Thermotogota Phylum

Dictyoglomota Phylum

Thermodesulfobiota Phylum

	Coprothermobacteriota Phylum

	Caldisericota Phylum

Fusobacteria Realm

Fusobacteriota Kingdom

	Wallbacteriota Phylum

	Muirbacteriota Phylum

Riflebacteriota Phylum

	Mcinerneyibacteriota Phylum

	Fusobacteriota Phylum

Patescibacterida Kingdom

	Patescibacteriota Phylum

	BipolaricaulotaPhylum

	Deinococcota Phylum

Hydrobacteria Realm

Elusimicrobia SubRealm

Elusimicrobidia Kingdom

Elusimicrobiota

	Goldbacteriota

	Firestonebacteriota

Aerophobida Kingdom

Desantisbacteriota

Aerophobota

Auribacteroita

	Ratteibacteriota

	Omnitrophota

Planctobacteria SubRealm

Spirochaetida Kingdom

Lindowbacteriota

	Babelota (Dependentiae)

	Spirochaetota

Planctobacterida Kingdom

Planctobacteriota

	Chlamydobacteriota

	Verrucomicrobiota

	Sphingobacteria SubRealm

	Proteobacteria SubRealm

Terrabacteria Realm

Sphingobacteria SubRealm

Sumerlaeada Kingdom

	Hinthialibacteriota Phylum (OLB16)

	Sumerlaeota Phylum

Poribacteriota Phylum

	Abyssobacteriota Phylum

	Hydrogenedentota Phylum

Sphingobacterida Kingdom

Coatesibacteriota Phylum (RBG-13-66-14)

Fermentibacteriota Phylum

Eisenbacterada SubKingdom

Edwardsbacteriota Phylum

	Latescibacteriota Phylum

	Zixibacteriota Phylum

Gemmatimonadota Phylum

	Krumholzibacteriota Phylum

	Eisenbacteriota Phylum

Fibrobacterada SubKingdom

	Hydrothermota Phylum (WOR-3)

	Cloacimonadota Phylum

Fibrobacteriota Phylum

	Delongbacteriota Phylum

	Electryoneota Phylum (AABM5-125-24)

Marinisomatota Phylum

	Calditrichota Phylum

	Bacteroidota Phylum

Fermentibacterada SubKingdom

Proteobacteria SubRealm

Acidobacteriota

"Deltabacteria"

	SAR324 ("Lambdaproteobacteria")

	Bdellovibrionota

FEN-1099 ("Lernaellota")

	Desulfobacterota_B ("Binatota")

	Myxococcota

	Desulfobacterota_C ("Deferrisomatota")

	Desulfobacterota_E ("Deferrimicrobiota")

	Moduliflexota

	Methylomirabilota

Schekmanbacteria

	Tectomicrobia

	Nitrospinota

Nitrospirota

Desulfobacterota_F("Desulfuromonadia")

Desulfobacterota

"Aquificida"

	Desulfobacterota_D ("Dadabacteria")

	Calescibacterota ("Calescamantes")

	Desulfobacterota_G ("Syntrophorhabdota")

	?SZUA-79 (Acidulidesulfobacterales", "Acidulodesulfobacteriota" sic)

Thermosulfidibacterota

	Chrysiogenota

	Deferribacterota

	Aquificota

	Campylobacterota

	Nitrospirota_A ("Leptospirillia", "Leptospirillaeota")

	Pseudomonadota (s.s.)

Taxonomy[edit]

Bacteria Domain
- Terrabacteria Realm
- Bacilia Realm
- Actinobacteria Realm
- Cyanobacteria Realm
- Thermotogia Realm
- Fusobacteria Realm
- Hydrobacteria Realm
  - Elusimicrobia SubRealm
  - Planctobacteria SubRealm
  - Sphingobacteria SubRealm
  - Proteobacteria SubRealm

Archaea[edit]

Phylogeny[edit]

Taxonomy[edit]

Eukarya[edit]

Phylogeny[edit]

Taxonomy[edit]

References[edit]

^ ^a ^b ^c ^d "Virus Taxonomy: 2022 Release". International Committee on Taxonomy of Viruses (ICTV). Retrieved 12 August 2023.
^ ^a ^b "Subviral Agent: Viroids; Updated Report". International Committee on Taxonomy of Viruses (ICTV). Retrieved 12 August 2023.
^ ^a ^b "Satellites and Other Virus-dependent Nucleic Acids: 9th report". International Committee on Taxonomy of Viruses (ICTV). Retrieved 12 August 2023.
^ "ICTV report chapters by genome". International Committee on Taxonomy of Viruses (ICTV). Retrieved 13 August 2023.
^ ^a ^b ^c Luketa A. (2012). "New views on the megaclassification of life" (PDF). Protistology. 7 (4): 218–237.

[ICTV-1] "Virus Taxonomy: 2022 Release". International Committee on Taxonomy of Viruses (ICTV). Retrieved 12 August 2023.

[ICTVviroid-2] "Subviral Agent: Viroids; Updated Report". International Committee on Taxonomy of Viruses (ICTV). Retrieved 12 August 2023.

[ICTVsatellite-3] "Satellites and Other Virus-dependent Nucleic Acids: 9th report". International Committee on Taxonomy of Viruses (ICTV). Retrieved 12 August 2023.

[ICTVreport-4] "ICTV report chapters by genome". International Committee on Taxonomy of Viruses (ICTV). Retrieved 13 August 2023.

[Luketa-5] Luketa A. (2012). "New views on the megaclassification of life" (PDF). Protistology. 7 (4): 218–237.

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