Template:1998–99 Division I Independent ice hockey standings (men)
| Conference | Overall | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GP | W | L | T | PTS | GF | GA | GP | W | L | T | GF | GA | ||
| Air Force | 0 | 0 | 0 | 0 | - | - | - | 36 | 15 | 19 | 2 | 113 | 128 | |
| Alabama–Huntsville | 0 | 0 | 0 | 0 | - | - | - | 27 | 21 | 5 | 1 | 159 | 76 | |
| Army | 0 | 0 | 0 | 0 | - | - | - | 34 | 15 | 16 | 3 | 130 | 103 | |
| Mankato State | 0 | 0 | 0 | 0 | - | - | - | 39 | 18 | 16 | 5 | 149 | 129 | |
| Nebraska–Omaha | 0 | 0 | 0 | 0 | - | - | - | 35 | 11 | 24 | 0 | 95 | 141 | |
| Niagara | 0 | 0 | 0 | 0 | - | - | - | 32 | 17 | 12 | 3 | 103 | 85 | |
| Final rankings: USA Today/American Hockey Magazine Coaches Poll Top 10 Poll | ||||||||||||||