C9orf64

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C9orf64
Identifiers
AliasesC9orf64, chromosome 9 open reading frame 64
External IDsOMIM: 611342 MGI: 1917403 HomoloGene: 13005 GeneCards: C9orf64
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_032307
NM_001317997

NM_027335

RefSeq (protein)

NP_001304926
NP_115683

NP_081611

Location (UCSC)Chr 9: 83.94 – 83.96 MbChr 13: 58.53 – 58.53 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

C9orf64 (Chromosome 9 open reading frame 64) is a gene located on chromosome 9, that in humans encodes the protein queuosine salvage protein.[5] The function and biological process of the queuosine salvage protein is a queuosine-nucleotide N-glycosylase/hydrolase (QNG1) that releases queuine from Q-5'-monophosphate, and this activity is required for the salvage of queuine from exogenous Queuosine by S. pombe and HeLa cells.[6] Some evidence from orthologs indicates it may be involved in tRNA processing and recycling. The most common mRNA contains 4 coding exons, and it has 2 additional alternatively spliced exons.[5] C9orf64 has been found in 5 different splice variants.[7]

Expression of this gene is highest in the duodenum and small intestine, and it is also expressed in 24 other tissues.[8]

22 variants have been annotated in the NIH Database, ClinVar, linked to disease conditions such as seizures, developmental delay, and muscular hypotonia.[9]

Protein[edit]

Queuosine salvage protein is 341 amino acids long with a molecular weight of 39,029 daltons and an isoelectric point of 5.61. It is a member of the DUF2419 superfamily.[10][11] The DUF position on the human protein is from amino acid 53 to 341.[10] Bioinformatic tools at ExPASy predicted a second peroxisomal targeting signal.[12] Crystal structures of wild-type human QNG1 and QNG1 in complex with queuine have been deposited with the Protein Data Bank under accession numbers 7UGK and 8DL3.[13][14] The DUF position on the human protein is from amino acid 53 to 341.[10]

Gene locus[edit]

C9orf64 is located on chromosome 9q21.32.[5] The genes closest to C9orf64 on the long arm of chromosome 9 include GKAP1, KIF27, HNRNPK, RMI1, and a MicroRNA MIR7-1.[15]

Homology[edit]

C9orf64 is only found in eukaryotes. Orthologs have been found from primates to fungi and plants.[11]

References[edit]

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000165118Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000021550Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ a b c "Entrez Gene: C9orf64".
  6. ^ Hung SH, Elliott GI, Ramkumar TR, Burtnyak L, McGrenaghan CJ, Alkuzweny S, Quaiyum S, Iwata-Reuyl D, Pan X, Green BD, Kelly VP, De Crécy-Lagard V, Swairjo MA (2023). "NCBI: PubMed". Nucleic Acids Research. 51 (2): 935–951. doi:10.1093/nar/gkac1231. PMC 9881137. PMID 36610787.
  7. ^ "NCBI: AceView".
  8. ^ "C9orf64 chromosome 9 open reading frame 64 [Homo sapiens (human)] - Gene - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-06-02.
  9. ^ ClinVar. "C9orf64[gene] - ClinVar - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-06-02.
  10. ^ a b c "Sanger: Welcome Trust Institute". Archived from the original on 2012-11-03.
  11. ^ a b "BLAST results for LOC84267 [Homo sapiens]".
  12. ^ "ExPASy Proteomics Server".
  13. ^ " "PDB:7UGK".
  14. ^ "PDB:8DL3".
  15. ^ "Entrez Gene: C9orf64 chromosome 9 open reading frame 64 [Homo sapiens]".

Further reading[edit]

External links[edit]